Hi Brent,
Yes you can output whatever file to as many places as you like
Ideal Flight checks itself for malware when you run the installer, if it detects malware attached it will end with a message and not continue and run in admin mode for the install.
If you run an infected program as admin, it is already too late, the payload is written to protected areas.
When you allocate export directories for IF, re-running the setup program will ensure the proper rights are enabled on those directories.
Software that demands admin rights is flawed and a danger to your security.
Steve